About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1773822_1776074_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1773822 - 1776074
Intron Length:
2253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTCTCATTGATA
Flanking Amino Acid:
WMMIHRILNHSFDKKGDIHY
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69
0.43
1
62.3
43.3
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
60
0.31
1.6
68.2
38.2

Associated Gene:

Gene:
CHD5
Ensembl Gene ID:
ENSAPLG00000015475
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020685
1758545 - 1791883
33339
ENSAPLT00000016223
1758545 - 1791883
33339