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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1791051_1791778_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1791051 - 1791778
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCCACTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TCTCTTTCCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
62
37
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
79.8
0.67
0.8
76.5
32
Minor 5ss
30
-2.3
3.1
36.6
34.4
Minor BPS
47.7
-0.1
1.9
68.64
42.7

Associated Gene:

Gene:
CHD5
Ensembl Gene ID:
ENSAPLG00000015475
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020685
1758545 - 1791883
33339
ENSAPLT00000016223
1758545 - 1791883
33339
Gene:
Ensembl Gene ID:
ENSAPLG00000023220
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046095
1789555 - 1796332
6778