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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1793744_1793807_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1793744 - 1793807
Intron Length:
64

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCATCCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAC
U12 Branch Point Sequence:
CATCCCCTACAG
Flanking Amino Acid:
KRTKDIHKKCPLHEEPYIMF
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
49.5
-0
1.2
58.5
38.2
Major PPT
72.9
0.51
0.8
65.1
30.4
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
43.2
-0.6
2
48.28
44.4

Associated Gene:

Gene:
RNF207
Ensembl Gene ID:
ENSAPLG00000021521
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020789
1791795 - 1796910
5116