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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1794036_1794112_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1794036 - 1794112
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
CCACCCCGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCACAG
U12 Branch Point Sequence:
AGCACCACAGCC
Flanking Amino Acid:
GCEKLDQAVLAVKELQTSTR
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
59.8
45.2
Major BPS
43
-0.4
1.4
48.6
36.6
Major PPT
54.5
0.1
1
49.7
33.8
Minor 5ss
30.8
-2.2
3.4
36.8
42.9
Minor BPS
41.2
-0.6
1.9
48.18
40.8

Associated Gene:

Gene:
RNF207
Ensembl Gene ID:
ENSAPLG00000021521
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020789
1791795 - 1796910
5116