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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1794239_1794357_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1794239 - 1794357
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TTGCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCGGCAT
U12 Branch Point Sequence:
CGTGCGGCATCC
Flanking Amino Acid:
AINALFSGMQEQLSERKKAL
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
41.9
-0.5
1.5
45
47.8
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
32
-1.3
2.6
42.5
44.7

Associated Gene:

Gene:
RNF207
Ensembl Gene ID:
ENSAPLG00000021521
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020789
1791795 - 1796910
5116