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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1794405_1794591_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1794405 - 1794591
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
TCACCCAGAGCC
Flanking Amino Acid:
RKKALLKAVQSQHEEKEKAF
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
75.3
0.57
0.9
69.1
37
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
44.5
-0.4
1.9
55.22
42.1

Associated Gene:

Gene:
RNF207
Ensembl Gene ID:
ENSAPLG00000021521
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020789
1791795 - 1796910
5116