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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1796804_1796882_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1796804 - 1796882
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
CCACCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
CGCTGCCTATCG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
54.9
44.4
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
72.4
0.51
0.8
65.1
30.3
Minor 5ss
26.8
-2.7
3.6
28.5
43.8
Minor BPS
40.7
-0.8
2.2
44.25
47.3

Associated Gene:

Gene:
RNF207
Ensembl Gene ID:
ENSAPLG00000021521
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020789
1791795 - 1796910
5116