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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1800997_1801572_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1800997 - 1801572
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCTTG
5'SS Class:
major
3'SS Sequence:
GCTTCGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTGTGCTGACGG
Flanking Amino Acid:
EFTLEKLLVPEMKQITWLST
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
69.7
43.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
76.5
0.6
0.9
69.1
37
Minor 5ss
42.9
-0.8
2.9
56
48.2
Minor BPS
39.1
-0.9
2.3
43.2
48.2

Associated Gene:

Gene:
ICMT
Ensembl Gene ID:
ENSAPLG00000020766
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020597
1800370 - 1803079
2710