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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1801743_1802606_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1801743 - 1802606
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
GCCCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGGT
U12 Branch Point Sequence:
GCTGCCCTGCCC
Flanking Amino Acid:
AGRSAWRHFGWYMCSLSLFH
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
60.5
44.3
Major BPS
30.2
-1.2
4.2
51.1
46.3
Major PPT
61.8
0.27
0.9
53.6
31
Minor 5ss
28.8
-2.4
3.5
34.5
43.8
Minor BPS
36.9
-1
3.5
54.99
43.5

Associated Gene:

Gene:
ICMT
Ensembl Gene ID:
ENSAPLG00000020766
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020597
1800370 - 1803079
2710