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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1805534_1805675_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1805534 - 1805675
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAGG
5'SS Class:
major
3'SS Sequence:
TGCCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
CTGTGCTGAGCA
Flanking Amino Acid:
MWMVRWPVNYRLSNTRKQAV
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
73.7
0.53
0.8
65.2
36.2
Minor 5ss
36.1
-1.6
3.3
48.9
46.9
Minor BPS
46.7
-0.2
2.1
59.9
45.9

Associated Gene:

Gene:
GPR153
Ensembl Gene ID:
ENSAPLG00000023029
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025549
1803894 - 1807492
3599
ENSAPLT00000025081
1803894 - 1806031
2138