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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1808632_1810677_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1808632 - 1810677
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CGCTTACTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCGCTTACTG
Flanking Amino Acid:
GKPLPVPQLLTETEDEKRRF
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
65.7
0.35
1
58
42.3
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
50.9
-0.1
2.1
64.41
43.9

Associated Gene:

Gene:
ACOT7
Ensembl Gene ID:
ENSAPLG00000015276
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040751
1807874 - 1817323
9450
ENSAPLT00000026352
1807874 - 1817531
9658
ENSAPLT00000020367
1807874 - 1817323
9450
ENSAPLT00000015924
1807874 - 1818130
10257
ENSAPLT00000041748
1807874 - 1817901
10028