Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1811159_1811315_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1811159 - 1811315

Intron Length:

157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGGGGG

5'SS Class:

major

3'SS Sequence:

TGTGCTGATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

AAGAGCAGAAAT

Flanking Amino Acid:

AINFHEKIKKERRPGAGGTW

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.3

59.5

42.5

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

68.6

0.42

1.1

62.2

43.5

Minor 5ss

-3

3.2

29.6

43.2

Minor BPS

38.9

-0.7

52.12

41.4

Associated Gene:

Gene:

ACOT7

Ensembl Gene ID:

ENSAPLG00000015276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041748

1807874 - 1817901

10028

ENSAPLT00000026352

1807874 - 1817531

9658

ENSAPLT00000020367

1807874 - 1817323

9450