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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1811433_1813836_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1811433 - 1813836
Intron Length:
2404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGGCAC
U12 Branch Point Sequence:
TCTGCCTTCCTC
Flanking Amino Acid:
DCTLLGFVHGGVTMKLMDEV
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
45
-0.3
1.5
51
44.3
Major PPT
78.4
0.64
0.7
73.1
25.1
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
40
-0.7
3.6
61.11
45.2

Associated Gene:

Gene:
ACOT7
Ensembl Gene ID:
ENSAPLG00000015276
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015924
1807874 - 1818130
10257
ENSAPLT00000041748
1807874 - 1817901
10028
ENSAPLT00000040751
1807874 - 1817323
9450
ENSAPLT00000026352
1807874 - 1817531
9658
ENSAPLT00000020367
1807874 - 1817323
9450