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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1815078_1815202_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1815078 - 1815202
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
GGTGCTCCGAGT
Flanking Amino Acid:
NKVVEVPPIQYARKEQEDEG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
38.8
-0.8
2
53.4
42

Associated Gene:

Gene:
ACOT7
Ensembl Gene ID:
ENSAPLG00000015276
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015924
1807874 - 1818130
10257
ENSAPLT00000041748
1807874 - 1817901
10028
ENSAPLT00000040751
1807874 - 1817323
9450
ENSAPLT00000026352
1807874 - 1817531
9658
ENSAPLT00000020367
1807874 - 1817323
9450