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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1817039_1817848_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1817039 - 1817848
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TCCGTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GGGCTCTGACCC
Flanking Amino Acid:
PGPGHHPGLQEPCVAALARV
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
67.2
0.39
0.9
57.5
38.6
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
45.2
-0.3
1.7
50.02
40

Associated Gene:

Gene:
ACOT7
Ensembl Gene ID:
ENSAPLG00000015276
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015924
1807874 - 1818130
10257