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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1829005_1829088_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1829005 - 1829088
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCACGGCAC
5'SS Class:
major
3'SS Sequence:
TCACGTCGGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATGAGCTTCACG
Flanking Amino Acid:
IVWLVSAAWARLSERDDDGA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.3
58
43.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
44.8
-0.3
1.7
49.9
43.7
Minor 5ss
20.1
-3.4
4
32.7
42.4
Minor BPS
46.1
-0.4
2.3
54.18
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018094
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029537
1828706 - 1829281
576