About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1833302_1833409_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1833302 - 1833409
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
CCTTCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
CCTTCCTCCACA
Flanking Amino Acid:
FSGSGQAGANAESPLSSPSP
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
69.1
41.9
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
77.9
0.63
0.7
71.9
26.3
Minor 5ss
35.4
-1.7
3.6
52.7
44.8
Minor BPS
54.7
0.14
2
67.11
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025498
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033894
1830298 - 1836572
6275