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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1838869_1838941_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1838869 - 1838941
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CCCACACCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCCTGCTCACCC
Flanking Amino Acid:
CHVCYECDHHAFQTVLSNCS
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
62
0.27
0.9
54
29.5
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
42.8
-0.5
2.2
49.59
47.1

Associated Gene:

Gene:
TNFRSF25
Ensembl Gene ID:
ENSAPLG00000020234
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046580
1837612 - 1841797
4186