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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1849632_1849725_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1849632 - 1849725

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TCTGTCCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAA

U12 Branch Point Sequence:

TCGCCCCCAACG

Flanking Amino Acid:

YIRKLKVITDLFLCCLLNLQ

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

1.3

69.3

35.8

Major BPS

45.3

-0.2

1.2

35.2

Major PPT

75.6

0.58

0.8

31.7

Minor 5ss

29.9

-2.3

3.1

35.2

33.9

Minor BPS

47.2

-0.3

54.05

46.3

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042045

1698774 - 1853266

154493