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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1849822_1849899_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1849822 - 1849899

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCCA

5'SS Class:

major

3'SS Sequence:

CTCAGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GCGGCACTAACG

Flanking Amino Acid:

SWQQIIEGTEALTRRQCHQQ

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.1

63.2

42.9

Major BPS

64.5

0.36

65.2

28.2

Major PPT

65.5

0.35

0.9

57.8

33.1

Minor 5ss

29.6

-2.3

3.4

39.1

46.2

Minor BPS

43.6

-0.6

45.86

46.1

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042045

1698774 - 1853266

154493