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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1850424_1852103_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1850424 - 1852103

Intron Length:

1680

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGAGAC

U12 Branch Point Sequence:

TGTCCCCGCACA

Flanking Amino Acid:

PGRREGAEVLAPGRRRKNMT

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

45.6

-0.2

1.2

38.1

41.7

Major PPT

67.5

0.39

0.9

35.2

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

45.8

-0.3

2.2

63.87

41.6

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042045

1698774 - 1853266

154493