Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1852465_1852541_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1852465 - 1852541

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTCCA

5'SS Class:

strong_major

3'SS Sequence:

GGTGTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGGGAC

U12 Branch Point Sequence:

CCCCGCGGGACC

Flanking Amino Acid:

IVPAMKKKSLGEVLLPVFER

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

67.6

39.4

Major BPS

45.5

-0.2

1.4

40.8

41.4

Major PPT

66.5

0.37

0.9

58.7

38.3

Minor 5ss

28.6

-2.5

2.7

25.4

36.3

Minor BPS

35.5

-1.1

2.2

39.1

40.4

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042045

1698774 - 1853266

154493