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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1852794_1852920_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1852794 - 1852920
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCGT
5'SS Class:
major
3'SS Sequence:
GCTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTCAC
U12 Branch Point Sequence:
GCCCCGGTCACC
Flanking Amino Acid:
EDDEGPADGRGDRRSSALKL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
59.7
46.7
Major BPS
49
-0
1.3
52.4
43.3
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
33.7
-1.9
3.1
39.3
46
Minor BPS
35.8
-1.1
2.7
43.75
44.2

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042045
1698774 - 1853266
154493