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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1853024_1853136_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1853024 - 1853136
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
CACCCGTGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
AGCCCCACACCC
Flanking Amino Acid:
GHIRFDLPPQGSILARNVST
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
59.1
0.21
1
52.5
36.3
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
41.3
-0.6
1.9
48.61
40.6

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042045
1698774 - 1853266
154493