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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1866301_1867176_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1866301 - 1867176
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTTTCTTGATG
Flanking Amino Acid:
EFPRAGVAGEARVHSSILRD
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.7
44.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
85
0.79
0.8
76.7
37.4
Minor 5ss
38.4
-1.3
2.8
47
41.7
Minor BPS
69.2
0.46
1.3
69.4
38.8

Associated Gene:

Gene:
NOL9
Ensembl Gene ID:
ENSAPLG00000015445
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029474
1864337 - 1871571
7235
ENSAPLT00000016089
1864337 - 1871571
7235