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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1868703_1869446_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1868703 - 1869446
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTCACTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GCTTCTTTCACT
Flanking Amino Acid:
NRYLINLLLNHLPSVEYMEC
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
83.7
0.76
0.8
78.3
28.9
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
66.7
0.61
1.7
80.14
42.2

Associated Gene:

Gene:
NOL9
Ensembl Gene ID:
ENSAPLG00000015445
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029474
1864337 - 1871571
7235
ENSAPLT00000016089
1864337 - 1871571
7235