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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1870234_1870451_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1870234 - 1870451
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTCTTCTCAACC
Flanking Amino Acid:
PPLSRLFEAQKKEESSFTTE
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.2
0.57
0.8
69.3
31.5
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
64.9
0.45
1.6
71
40.3

Associated Gene:

Gene:
NOL9
Ensembl Gene ID:
ENSAPLG00000015445
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029474
1864337 - 1871571
7235
ENSAPLT00000016089
1864337 - 1871571
7235