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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1878273_1878360_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1878273 - 1878360
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTACGACCC
5'SS Class:
weak_major
3'SS Sequence:
CATATTCCGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
TCTTCTGGCACG
Flanking Amino Acid:
NTFELSDVLEASCRRPRRRM
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.8
0.07
1.4
45.4
43.1
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
66.9
0.38
1
61.6
39.7
Minor 5ss
33.1
-1.9
3.2
39
39.3
Minor BPS
42.8
-0.7
2.5
55.32
46.3

Associated Gene:

Gene:
KLHL21
Ensembl Gene ID:
ENSAPLG00000026961
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017327
1875383 - 1884150
8768