About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1883818_1887570_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1883818 - 1887570
Intron Length:
3753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCGCGGC
5'SS Class:
major
3'SS Sequence:
GGGCGACCCTCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGAGAC
U12 Branch Point Sequence:
ACGCCGATGAGC
Flanking Amino Acid:
PQDEASVTEHSSVWD
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.34
1.1
49
42.3
Major BPS
48.5
-0
1.2
44.4
38.7
Major PPT
54.3
0.1
1
47.6
40.7
Minor 5ss
30.7
-2.2
3.5
40.8
45.9
Minor BPS
36.8
-1
2.3
41.94
38.9

Associated Gene:

Gene:
PHF13
Ensembl Gene ID:
ENSAPLG00000015717
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016381
1883803 - 1888381
4579