Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1887761_1888154_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1887761 - 1888154

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CATTTCGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACGTAAC

U12 Branch Point Sequence:

AGAGACGTAACT

Flanking Amino Acid:

GDDEDIMVDSDDDSWDLVTC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

73.2

37.5

Major BPS

53.1

0.08

1.2

55.3

37.9

Major PPT

80.3

0.68

0.9

36.8

Minor 5ss

31.6

-2.1

3.4

43.4

44.3

Minor BPS

46.5

-0.1

2.2

65.18

44.7

Associated Gene:

Gene:

PHF13

Ensembl Gene ID:

ENSAPLG00000015717

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016381

1883803 - 1888381

4579