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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1896684_1896810_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1896684 - 1896810
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTATTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTATTTTGACA
Flanking Amino Acid:
LQKKQEAEAAVRLMQESVRR
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.7
0.65
1
75.6
38.1
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
64.1
0.44
1.3
70
36.5

Associated Gene:

Gene:
DNAJC11
Ensembl Gene ID:
ENSAPLG00000015815
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016534
1894590 - 1907631
13042