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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1897341_1898294_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1897341 - 1898294
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTCTGACCT
Flanking Amino Acid:
GVPQGVSLKIKLNRASQTYF
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
71.4
35.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.2
0.95
0.7
88.3
28.9
Minor 5ss
37.6
-1.4
2.7
42.8
37.9
Minor BPS
60.8
0.42
1.8
80.07
42.1

Associated Gene:

Gene:
DNAJC11
Ensembl Gene ID:
ENSAPLG00000015815
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016534
1894590 - 1907631
13042