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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1899509_1900562_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1899509 - 1900562
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCATTCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTTCTCATTC
Flanking Amino Acid:
LKIFRNLTPRCFITTNCALQ
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.9
0.63
0.8
70.2
36.2
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
52.2
0.05
1.8
65.67
40.8

Associated Gene:

Gene:
DNAJC11
Ensembl Gene ID:
ENSAPLG00000015815
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016534
1894590 - 1907631
13042