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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1900637_1901683_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1900637 - 1901683
Intron Length:
1047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTATAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTTCTAACT
Flanking Amino Acid:
RVTSAKGWGELEFGAGDLQG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.7
0.47
1
65.8
38.6
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
65.7
0.57
1.6
85.74
33.9

Associated Gene:

Gene:
DNAJC11
Ensembl Gene ID:
ENSAPLG00000015815
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016534
1894590 - 1907631
13042