Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1901807_1902520_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1901807 - 1902520

Intron Length:

714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TTAATTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

AATACATTAATT

Flanking Amino Acid:

NKMHISQSIEAPLTATDTAI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

86.6

0.82

0.8

84.9

35.4

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

64.4

0.53

1.6

78.17

37.5

Associated Gene:

Gene:

DNAJC11

Ensembl Gene ID:

ENSAPLG00000015815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016534

1894590 - 1907631

13042