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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1902650_1907514_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1902650 - 1907514
Intron Length:
4865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTGTTAATA
Flanking Amino Acid:
RRLQQRTNPKGTISVGIDAT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
80
0.75
1
78.6
31
Major PPT
72.1
0.5
0.8
70
35.9
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
62.5
0.39
2
75.34
36.5

Associated Gene:

Gene:
DNAJC11
Ensembl Gene ID:
ENSAPLG00000015815
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016534
1894590 - 1907631
13042