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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1940377_2000965_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1940377 - 2000965
Intron Length:
60589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTAAA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TTTTTTCTACGT
Flanking Amino Acid:
KERHRWNTNEEIAAYLITFE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.1
35
Major BPS
61.3
0.28
1
62
30.6
Major PPT
90.3
0.91
0.7
88.4
28.7
Minor 5ss
33.7
-1.9
2.9
41.9
44.8
Minor BPS
48
-0
2.1
75.41
41.9

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015439
1916870 - 2234125
317256
ENSAPLT00000042462
1916870 - 2234156
317287