About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2192537_2193503_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2192537 - 2193503
Intron Length:
967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
TCTGTCTTACCA
Flanking Amino Acid:
QPGVLRCYCPAHDTGLVTLQ
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
90.7
0.92
0.6
88.8
20.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
60
0.31
1.8
70.02
42.9

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015439
1916870 - 2234125
317256
ENSAPLT00000042462
1916870 - 2234156
317287