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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2210173_2210522_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2210173 - 2210522
Intron Length:
350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
GTTTCCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTCAT
U12 Branch Point Sequence:
TTGTCTACAGAG
Flanking Amino Acid:
ATLIQTLIKWRTKHADSIDL
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.8
40.9
Major BPS
54.5
0.11
1.4
59.3
47.1
Major PPT
78.6
0.64
0.8
70.6
36.2
Minor 5ss
33.7
-1.9
3.1
45.2
42.3
Minor BPS
41.5
-0.7
2
49.93
43.8

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043182
2209595 - 2234156
24562
ENSAPLT00000042462
1916870 - 2234156
317287
ENSAPLT00000024124
2209595 - 2234156
24562
ENSAPLT00000015439
1916870 - 2234125
317256