About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2210602_2211017_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2210602 - 2211017
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCAAT
U12 Branch Point Sequence:
TTTTCTTTGTTT
Flanking Amino Acid:
NVDHFSCTPLMWACALGHMD
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
54
0.1
1.4
62.7
41.6
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
49.4
0.03
3.5
86.34
34.1

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024124
2209595 - 2234156
24562
ENSAPLT00000015439
1916870 - 2234125
317256
ENSAPLT00000043182
2209595 - 2234156
24562
ENSAPLT00000042462
1916870 - 2234156
317287