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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2211334_2211714_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2211334 - 2211714
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTCATTTTGACC
Flanking Amino Acid:
GVTVISSTNTELRRPRSEPS
Intron Amino Acid Position:
1202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
62.9
0.39
1.3
69.4
36.6

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043182
2209595 - 2234156
24562
ENSAPLT00000042462
1916870 - 2234156
317287
ENSAPLT00000024124
2209595 - 2234156
24562
ENSAPLT00000015439
1916870 - 2234125
317256