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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2212239_2214494_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2212239 - 2214494
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
TGTCAGTTAAAG
Flanking Amino Acid:
DCLPHMDDLQVNMMTLAEHI
Intron Amino Acid Position:
1377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.4
34.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
75.1
0.56
0.7
72.5
25.7
Minor 5ss
42.3
-0.8
3
57.2
47.1
Minor BPS
45.5
-0.4
2.3
56.39
44.1

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015439
1916870 - 2234125
317256
ENSAPLT00000043182
2209595 - 2234156
24562
ENSAPLT00000042462
1916870 - 2234156
317287
ENSAPLT00000024124
2209595 - 2234156
24562