Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2215359_2215822_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2215359 - 2215822

Intron Length:

464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCACGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

GTCTGATTAATT

Flanking Amino Acid:

LVQTVFRKYKGRPLREQQEV

Intron Amino Acid Position:

1522

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

72.3

37.8

Major BPS

0.6

1.2

75.9

36.3

Major PPT

78.2

0.63

0.8

73.8

30.1

Minor 5ss

39.1

-1.2

3.1

52.5

44.7

Minor BPS

54.1

0.21

73.64

43.4

Associated Gene:

Gene:

CAMTA1

Ensembl Gene ID:

ENSAPLG00000014777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015439

1916870 - 2234125

317256

ENSAPLT00000043182

2209595 - 2234156

24562

ENSAPLT00000042462

1916870 - 2234156

317287

ENSAPLT00000024124

2209595 - 2234156

24562