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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2215895_2216838_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2215895 - 2216838
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
GTTTCTCCCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
CTAACATTAACT
Flanking Amino Acid:
IQRCYRKYKQLTWIALKYAL
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
68.7
0.42
1
72.4
32.7
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
65.2
0.55
1.7
79.23
42.2

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043182
2209595 - 2234156
24562