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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2216860_2219660_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2216860 - 2219660
Intron Length:
2801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
GCTTTTGGAACG
Flanking Amino Acid:
YKQLTWIALKYALYKKMTQA
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
85.7
0.8
0.7
81.6
30.5
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
45.1
-0.5
2.1
51.88
43.1

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043182
2209595 - 2234156
24562