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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2219855_2234092_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2219855 - 2234092
Intron Length:
14238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
GACATGTTATGT
Flanking Amino Acid:
RAATIVQQKLRVKELKKAKE
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
37.9
-0.8
2.3
49.64
43.9

Associated Gene:

Gene:
CAMTA1
Ensembl Gene ID:
ENSAPLG00000014777
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024124
2209595 - 2234156
24562