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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2238764_2240171_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2238764 - 2240171
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTCCTTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTTTCCTTACTG
Flanking Amino Acid:
MSASVPGSSN
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.4
35.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.7
0.74
0.8
77.7
29.5
Minor 5ss
29
-2.4
3.2
35.6
41.4
Minor BPS
67.3
0.4
1.7
70.75
43.1

Associated Gene:

Gene:
VAMP3
Ensembl Gene ID:
ENSAPLG00000012123
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012615
2238762 - 2241075
2314