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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_22397_22560_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22397 - 22560
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTTTTCATT
Flanking Amino Acid:
LLLSHSGILKVGDFGLAREY
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
87.4
26.6
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.8
85.4
28.2
Minor 5ss
41.1
-1
3.2
58.9
39.4
Minor BPS
53.6
0.19
1.7
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011992
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012527
19675 - 32824
13150