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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2247618_2248232_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2247618 - 2248232
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGACTT
5'SS Class:
major
3'SS Sequence:
TTCTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATACCTTCAATG
Flanking Amino Acid:
LPLWNVENQTDSLFEYAQVK
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
68.1
42.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
84.5
0.78
0.6
84.6
23.2
Minor 5ss
43.5
-0.7
3.1
57.3
46.8
Minor BPS
52.4
-0
1.6
56.57
39

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787