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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_2248282_2249003_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2248282 - 2249003
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
ATCCCTTTTACT
Flanking Amino Acid:
AQVKSFFCRLRGGKDQEQEK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
85.1
0.79
0.7
84.1
30.4
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
61.1
0.43
1.6
75.73
40.8

Associated Gene:

Gene:
PER3
Ensembl Gene ID:
ENSAPLG00000011254
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011738
2246076 - 2260862
14787